Cerium in PDB 4mae: Methanol Dehydrogenase From Methylacidiphilum Fumariolicum Solv

All present enzymatic activity of Methanol Dehydrogenase From Methylacidiphilum Fumariolicum Solv:
1.1.2.7; 1.1.2.8;

The structure of Methanol Dehydrogenase From Methylacidiphilum Fumariolicum Solv, PDB code: 4mae was solved by A.J.Pol, T.R.M.Barends, A.Dietl, A.F.Khadem, J.Eygenstein, M.S.M.Jetten, H.J.M.Op Den Camp, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.83 / 1.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	55.700, 75.500, 136.400, 90.00, 97.60, 90.00
R / Rfree (%)	16.1 / 18.9

The binding sites of Cerium atom in the Methanol Dehydrogenase From Methylacidiphilum Fumariolicum Solv (pdb code 4mae). This binding sites where shown within 5.0 Angstroms radius around Cerium atom.
In total 2 binding sites of Cerium where determined in the Methanol Dehydrogenase From Methylacidiphilum Fumariolicum Solv, PDB code: 4mae:
Jump to Cerium binding site number: 1; 2;

Cerium binding site 1 out of 2 in the Methanol Dehydrogenase From Methylacidiphilum Fumariolicum Solv


Mono view


Stereo pair view

A full contact list of Cerium with other atoms in the Ce binding site number 1 of Methanol Dehydrogenase From Methylacidiphilum Fumariolicum Solv within 5.0Å range: probe atom residue distance (Å) B Occ A:Ce601 b:11.6 occ:0.60 OD2 A:ASP301 2.5 12.4 1.0 O5 A:PQQ602 2.6 15.2 1.0 OE1 A:GLU172 2.7 12.9 1.0 O7A A:PQQ602 2.7 11.9 1.0 OD1 A:ASN256 2.7 13.4 1.0 OXT A:15P603 2.7 24.2 1.0 OD1 A:ASP301 2.8 14.0 1.0 N6 A:PQQ602 2.8 13.2 1.0 OD1 A:ASP299 2.9 10.6 1.0 OE2 A:GLU172 2.9 15.1 1.0 CG A:ASP301 3.0 9.8 1.0 CD A:GLU172 3.2 12.9 1.0 C5 A:PQQ602 3.4 14.8 1.0 C7X A:PQQ602 3.6 12.8 1.0 C6A A:PQQ602 3.6 14.2 1.0 CG A:ASN256 3.6 9.9 1.0 C7 A:PQQ602 3.7 11.9 1.0 CG A:ASP299 3.7 9.6 1.0 OD2 A:ASP299 3.8 10.5 1.0 C1 A:15P603 3.8 23.6 1.0 NH2 A:ARG326 4.3 11.5 1.0 ND2 A:ASN256 4.4 9.1 1.0 CB A:ASP301 4.4 7.6 1.0 CB A:ASN256 4.6 8.5 1.0 CG A:GLU172 4.7 12.0 1.0 CB A:SER255 4.7 6.5 1.0 O7B A:PQQ602 4.8 12.6 1.0 C4 A:PQQ602 4.8 13.9 1.0 NE1 A:TRP238 4.9 7.9 1.0 N A:ASN256 4.9 7.2 1.0 CA A:GLY171 4.9 9.8 1.0 CZ2 A:TRP238 5.0 7.9 1.0 CZ2 A:TRP260 5.0 7.4 1.0 C2 A:15P603 5.0 24.1 1.0

Cerium binding site 2 out of 2 in the Methanol Dehydrogenase From Methylacidiphilum Fumariolicum Solv


Mono view


Stereo pair view

A full contact list of Cerium with other atoms in the Ce binding site number 2 of Methanol Dehydrogenase From Methylacidiphilum Fumariolicum Solv within 5.0Å range: probe atom residue distance (Å) B Occ B:Ce601 b:10.9 occ:0.60 O5 B:PQQ602 2.5 13.1 1.0 OD1 B:ASP301 2.6 11.7 1.0 OE1 B:GLU172 2.6 13.5 1.0 OD2 B:ASP301 2.7 13.3 1.0 O7A B:PQQ602 2.7 9.7 1.0 OD1 B:ASN256 2.7 13.3 1.0 N6 B:PQQ602 2.8 13.9 1.0 OD1 B:ASP299 2.9 10.7 1.0 OE2 B:GLU172 2.9 14.3 1.0 CG B:ASP301 3.0 9.1 1.0 O2 B:15P603 3.0 29.5 1.0 CD B:GLU172 3.1 12.9 1.0 C5 B:PQQ602 3.4 13.3 1.0 C6A B:PQQ602 3.6 12.8 1.0 C7X B:PQQ602 3.6 11.8 1.0 CG B:ASN256 3.7 10.6 1.0 C7 B:PQQ602 3.7 10.8 1.0 CG B:ASP299 3.7 8.9 1.0 OD2 B:ASP299 3.7 10.9 1.0 NH2 B:ARG326 4.3 10.5 1.0 C4 B:15P603 4.4 29.5 1.0 ND2 B:ASN256 4.4 10.7 1.0 CB B:ASP301 4.5 7.6 1.0 CB B:ASN256 4.6 8.7 1.0 CG B:GLU172 4.6 11.8 1.0 CB B:SER255 4.8 6.7 1.0 C4 B:PQQ602 4.8 12.4 1.0 O7B B:PQQ602 4.8 10.7 1.0 NE1 B:TRP238 4.9 8.9 1.0 C3 B:15P603 4.9 29.0 1.0 N B:ASN256 4.9 7.3 1.0 CZ2 B:TRP260 5.0 8.5 1.0 CA B:GLY171 5.0 10.4 1.0

A.Pol, T.R.Barends, A.Dietl, A.F.Khadem, J.Eygensteyn, M.S.Jetten, H.J.Op Den Camp. Rare Earth Metals Are Essential For Methanotrophic Life in Volcanic Mudpots. Environ.Microbiol. V. 16 255 2014.
ISSN: ISSN 1462-2912
PubMed: 24034209
DOI: 10.1111/1462-2920.12249